Digital Bioacoustics

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Welcome to c/DigitalBioacoustics, a unique niche in the vast universe of online forums and digital communities. At its core, bioacoustics is the study of sound in and from living organisms, an intriguing intersection of biology and acoustics. Digital bioacoustics, an extension of this field, involves using technology to capture, analyze, and interpret these biological sounds. This community is dedicated to exploring these fascinating aspects of nature through a digital lens.

As you delve into c/DigitalBioacoustics, you'll notice it's not just another technical forum. This space transcends the usual drone of server rooms or the monotonous tap-tap of keyboards. Here, members engage in a unique fusion of natural wonders and technological prowess. Imagine a world where the rustling of leaves, the chirping of birds, and the mysterious calls of nocturnal creatures meet the precision of digital recording and analysis.

Within this domain, we, the participants, become both observers and participants in an intricate dance. Our mission is to unravel the mysteries of nature's soundtrack, decoding the language of the wild through the lens of science. This journey is not just about data and graphs; it's about connecting with the primal rhythm of life itself.

As you venture deeper, the poetic essence of our community unfolds. Nature's raw concert, from the powerful songs of mating calls to the subtle whispers of predator and prey, creates a tapestry of sounds. We juxtapose these organic melodies with the mechanical beeps and buzzes of our equipment, a reminder of the constant interplay between the natural world and our quest to understand it.

Our community embodies the spirit of curious scientists and nature enthusiasts alike, all drawn to the mystery and majesty of the natural world. In this symphonic melding of science and nature, we discover not just answers, but also new questions and a deeper appreciation for the complex beauty of our planet.

c/DigitalBioacoustics is more than a mere digital gathering place. It's a living, breathing symphony of stories, each note a discovery, each pause a moment of reflection. Here, we celebrate the intricate dance of nature and technology, the joy of discovery, and the enduring quest for understanding in a world filled with both harmony and dissonance.

For those brave enough to explore its depths, c/DigitalBioacoustics offers a journey like no other: a melding of science and art, a discovery of nature's secrets, and a celebration of the eternal dance between the wild and the wired.

Related communities:

https://lemmy.world/c/awwnverts
https://lemmy.world/c/bats
!biology@mander.xyz
https://lemmy.world/c/birding
https://lemmy.world/c/capybara
https://lemmy.world/c/jellyfish
https://lemmy.world/c/nature
!open_source_ecology@slrpnk.net
https://lemmy.world/c/opossums
https://lemmy.world/c/raccoons
https://lemmy.world/c/skunks
https://lemmy.world/c/whales

Please let me know if you know of any other related communities or any other links I should add.

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submitted 2 years ago* (last edited 1 year ago) by Haggunenons@lemmy.world to c/digitalbioacoustics@lemmy.world
 
 

A Collection of Resources related to the field of Digital Bioacoustics




SOFTWARE

Open-source Analytics

BirdVox - In-flight bird vocalization identification
VocalPy - A core package for acoustic communication research in Python
baRulho - an R package to quantify habitat-induced degradation of (animal) acoustic signals
DAS4Whales - a Python package to analyze Distributed Acoustic Sensing (DAS) data for marine bioacoustics
HARKBird - a set of scripts that use HARK for analyzing acoustic interactions among species and their surrounding acoustic environment.
OpenSoundscape (OPSO) - OpenSoundscape (OPSO) is free and open source Python utility library analyzing bioacoustic data.
Parselmouth - Parselmouth is a Python library for the Praat software.
PAMGuard - Open-source software for Passive Acoustic Monitoring
Perch - A bioacoustics research project by Google
Seewave - an R package dedicated to sound analysis and synthesis
SonoScape - SonoScape is a new software to process wav files using a full set of Acoustic Complexity metrics the (ACI metrics (ACIft, ACItf) and derivative indices: ACIft evenness, ACItf evenness, Sonic Signature Dissimilarity (SSD), Ecoacoustic Events (EE), EE Entropy, and Fractal dimensions of EE and SSD), developed under the MATLAB® platform.
warbler.py - a pipeline for segmenting, clustering and visualizing Adelaide's warbler songs
warbleR - is intended to facilitate the analysis of the structure of animal acoustic signals in R.
Whombat - an open-source web-based audio annotation tool designed to facilitate audio data labeling and annotation, with a special focus on aiding machine learning model development.

Open-source Soundscape

AviaNZ - Abundance estimation. The AviaNZ project is a collaboration between mathematicians, data scientists, and conservation biologists, to enable acoustic recordings of birdsong to be turned into reliable estimates of abundance
soundscape_IR- a python-based toolbox of soundscape information retrieval, aiming to assist in the analysis of soundscape recordings. The toolbox is primarily desgined for: (1) visualization of soundscape dynamics and (2) audio source separation.

Open-Source Machine Learning

AVES - (Animal Vocalization Encoder based on Self-Supervision) is a self-supervised, transformer-based audio representation model for encoding animal vocalizations ("BERT for animals")
BioLingual - Transferable Models for bioacoustics with Human Language Supervision. An audio-text model for bioacoustics based on contrastive language-audio pretraining.
soundclim - This repository compiles scripts and modules to search for soundmarks in audio recordings using machine learning.

Open-Source Database Access

rfishbase - interactive and programmatic access to the FishBase repository

Closed-source

Arbimon- Upload and analyze an unlimited amount of audio from your AudioMoth, Song Meter, or other recording device, with our free cloud-based analytical tool.
Avisoft-SASLab Pro - versatile sound analysis, editing, classification and synthesis tool.
Beluga and ARTwarp - MATLAB sound analysis tools
Kaleidoscope - versatile bioacoustics sound analysis tool, available in Pro and Lite, Kaleidoscope helps you more quickly identify species and report on findings.
Raven Pro - Raven Pro is a software program for the acquisition, visualization, measurement, and analysis of sounds. Raven Pro provides a powerful, user-friendly research and teaching tool for scientists working with acoustic signals. Raven Pro’s highly configurable views provide unparalleled flexibility in data display.
Raven Lite - Raven Lite is a free software program that lets users record, save, and visualize sounds as spectrograms and waveforms. Raven Lite is intended for students, educators, and hobbyists, and can be used for learning about sounds, as an aid in birdsong recognition, and in musical instruction.
SigPro - SigPro generates various noise sources or sine waves and plays WAV files at the desired sound pressure levels. Up to 8 independent sources can be generated real time of either pure tones, white, pink, red, full or 1/3 octave band-limited noise. WAV files of any sample rate can be looped to the desired length.

Hardware(Underwater)

Haiku Box - Device for identifying and being notified of different bird species. AURAL-M2The AURAL-M2 ( Autonomous Underwater Recorder for Acoustic Listening) is an underwater recorder used for any application that requires continuous underwater sound recording
HydroMoth - HydroMoth is a variant of the standard AudioMoth specifically designed to be deployed in the underwater case.
SoundTrap 300 series - The SoundTrap 300 series are compact self-contained underwater sound recorders for ocean acoustic research.

Hardware(Terrestrial)

AudioMoth - a low-cost, full-spectrum acoustic logger, based on the Gecko processor range from Silicon Labs. Just like its namesake the moth, AudioMoth can listen at audible frequencies, well into ultrasonic frequencies. It is capable of recording uncompressed audio to microSD card at rates from 8,000 to 384,000 samples per second and can be converted into a full-spectrum USB microphone.
Birdbuddy - AI-powered Smart Bird Feeder. Capture their photos and organize them in a beautiful collection.
Frontierlabs Bar-LT - The BAR-LT is a professional 2 channel audio recorder designed specifically for long term autonomous field deployments.
Wildlife Acoustics Song Meter Line - Passive Acoustic Monitoring Devices

DATASETS

Animal Kingdom - A Large and Diverse Dataset for Animal Behavior Understanding
AnuraSet - A large-scale acoustic multi-label dataset for neotropical anuran call classification in passive acoustic monitoring
AnimalSpeaks - over a million audio-caption pairs holding information on species, vocalization context, and animal behavior
BEANS: Benchmark of Animal Sounds - The Benchmark of Animal Sounds
Egyptian fruit bat calls Prat Et. al. 2017 - An annotated dataset of Egyptian fruit bat vocalizations across varying contexts and during vocal ontogeny
HubBugDB - HumBugDB: A Large-scale Acoustic Mosquito wingbeat Dataset
Ushichka - Bat echolocation data, a multichannel audio-video dataset consisting of between 12-22 microphones and three thermal cameras.
Watkins Marine Mammal Sound Database
Xeno-Canto - Massive bird database, over 10,000 species.

Systema Naturae - massive searchable collection of many different kinds of datasets across many different types of animals

Libraries

BirdNET - BirdNET is a research platform that aims at recognizing birds by sound at scale.
Discovery of Sound in the Sea - Well-organized examples of different kinds of sounds of marine animals
FishSounds Library - a comprehensive, global inventory of fish sound production research. Information can be searched by fish taxa, by sound characteristics, or by reference.
Macaulay Library - it features 150,000 recordings of 9,000 species, including three-quarters of all known birds to science.
MNHN - Large collection of birds sounds from Muséum National d'Histoire naturelle
MorphoSource - Find, view, and download 3D data representing the world's natural history, cultural heritage, and scientific collections.

Citizen Scientist Programs

Observations.be - the largest nature platform in the Netherlands and Belgium.
Happywhale - Happywhale engages citizen scientists to identify individual marine mammals, for fun and for science
eBird - eBird is among the world’s largest biodiversity-related science projects, with more than 100 million bird sightings contributed annually by eBirders around the world
Flukebook - Flukebook applies computer vision algorithms and deep learning to identify and track individual whales and dolphins across hundreds of thousands of photos. We help researchers collaborate with each other and citizen scientists contribute to the effort. A.I. scales and speeds research and conservation.

Live-streamed bioacoustics

Streaming audio from the ALOHA Cabled Observatory
Locus Sonus
Rainforest Connection Apple App

Live-streamed other

Smithsonian’s Naked Mole Rat cam

Online Forums

Bioacoustics Stack Exchange - Bioacoustics Stack Exchange is a question and answer site for people interested in the studies of non-human animal sounds and the impacts of sounds on animals. It only takes a minute to sign up.
Earth Species Project Discord - Join the dynamic and growing online conversation around interspecies communication!

Conferences

Detection, Classification, Localisation and Density Estimation (DCLDE) of marine mammals - Spring 2024 in Rotterdam, Netherlands
5th World Ecoacoustics Congress - July 8-12 in Madrid, Spain
The African Bioacoustics Community - Fall 2024 in Cape Town, SA
IBAC - 2025 in Denmark

Organizations

The African Bioacoustics Community - Bioacoustic research from Africa and by African scientists is not well represented in the global field and thus the African Bioacoustics Community strives to shine a light on the achievements of bioacoustics research in Africa.
BDFFP - The Biological Dynamics of Forest Fragments Project
Earth Species Project - Earth Species Project is a non-profit dedicated to using artificial intelligence to decode non-human communication.
IBAC - The International Bioacoustics Society
Rainforest Connection - Rainforest Connection (RFCx) builds and deploys scalable, open acoustic monitoring systems that can halt illegal logging and poaching, and can enable biodiversity measurement and monitoring.
Robots4Whales - We monitor the presence of marine mammals from ocean-going robots using the sounds the animals make.

I'm sure there is so much that I have missed, so if you know of anything that belongs in here, please let me know and I'll get it added!

Edits:

02/07/24 - Haiku Box, Birdvox
02/05/24 - VocalPy
11/07/23 - BioLingual, AnimalSpeaks
11/09/23 - Discovery of Sound in the Sea, Macaulay Library
11/12/23 - Smithsonian's Naked Mole Rat cam, observations.be
11/25/23 - FishSounds Library

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cross-posted from: https://lemmy.world/post/29657822

Came across this long but great article about a very special subspecies of owl!

IIt starts out a bit of a rough read, and I was ready to pass on reading it, as it goes into the rough and disrespectful by modern standards methods of animal studies at the beginning of the last century.

The story jumps ahead to the present day, where now scientists and conservationist are doing the work, harnessing the latest technology and land and wildlife management techniques to outsmart owls with some of the best sight and hearing ever, cover huge swaths of terrain all at once, and stay one step ahead of the timber and cattle industries.

If you've got time to read through it, I think you will find many things of interest. Though owls have fascinated us since the beginning of human consciousness, it's still very recent that we've actually started to get to know them.

From Audubon

California naturalist Joseph Grinnell brought down the second owl with a single shot. The first had not been so easy.

It was the evening of June 18, 1915, and Grinnell had been working with a team of field assistants in Yosemite National Park to trap, shoot, catch, and catalog every creature they could find for the University of California Museum of Vertebrate Zoology. One of the men, Charles Holliger, had spotted the owls that morning near Ostrander Rocks, a knobby ridge of granite protruding out of the thick forest. But the owls—species yet unknown—proved uncooperative.

As Grinnell and Holliger worked their way through a “fine forest of fir,” the anxious call of a Ruby-crowned Kinglet cut the evening air. Following the sound, the men flushed a large owl, which landed atop a Jeffrey pine. Grinnell snuck up on the bird and fired—a hit, but no kill. “A Great Gray Owl,” he wrote in his field journal, underscoring the words in surprise. Its “deep reverberating who’s” drew a second owl. This time, Grinnell’s shot was sure.

What would become Specimen MVZ:Bird:25535 was tied up alive and brought back to camp to be photographed as one of Yosemite’s first two Great Gray Owl records. Grinnell surmised the owls were a mated pair; the owl shot second, Specimen MVZ:Bird:25534, was a male. Grinnell noted that the female had a large bare area on her belly and thighs, an “indubitable indication of breeding.”

Joseph Grinnell, the first director of the University of California Museum of Vertebrate Zoology, prepares a field specimen. Photo: The Bancroft Library/University of California

The owls were just two of a total of 4,354 creatures that Grinnell and his team amassed during their ambitious multi-year survey of the park. Yet he recognized the significance of this particular find.

“The discovery of the Great Gray Owl in the Yosemite section was one of the notable events in our field experience,” he wrote in Animal Life in the Yosemite, the 1924 book describing the survey. “And what was most surprising was the fact that the bird was apparently quite at home and nesting. No previous record of the breeding of this northern species of owl south of Canada is known to us.”

Grinnell’s ease in finding the owls would prove to be sheer luck. The California owls were so infrequently spotted in subsequent decades that biologists even reported on stuffed specimens, like one described in 1943 that “was darkened by smoke” from a stint on a family’s fireplace mantle. Grinnell’s The Distribution of the Birds of California, published posthumously in 1944, offered a terse summary of the owl’s situation: “Numbers small, justifying the term ‘rare.’”

Grinnell collected this female owl, MVZ:Bird:25535, during a 1915 survey of Yosemite National Park. Photo: C.D. Holliger Photo, Museum of Vertebrate Zoology Archives, University of California, Berkeley

Seven decades later, biologists are still trying to glean information about the elusive bird. As a species, they are breathtakingly large, North America’s biggest owl by length, nearly three feet long with a five-foot wingspan. Their populations span the top of the globe, across Europe, Asia, Canada, and Alaska, into the northwestern United States. But the California population has long held particular fascination, and scientists have turned to high-tech tools to expose its secrets once and for all.

With his tousled dirty blonde hair, and a wardrobe that skews heavily toward Carhartt jeans, Joe Medley, 33, has that mildly rumpled look of someone who has spent thousands of hours sitting in the woods, listening for rare birds.

One early evening this past spring, Medley, then a graduate student at the University of California, Davis, homed in on a charred ponderosa pine spattered with what looked like white paint. It sat at the edge of a mid-elevation wet meadow in the 900,000-acre Stanislaus National Forest on the western side of Yosemite National Park. He knew the whitewash, combined with a few scattered oval pellets the size of cigar stubs, was strong evidence that a Great Gray Owl had perched there, listening for prey out in the meadow. Thus he got to work, hooking up two black teacup-size funnels to one of the pine’s broken branches. Each funnel held a sensitive microphone wired to a recorder in a waterproof case, capable of logging the sounds of the meadow for a week or more.

An owl pellet found on the edge of the meadow contains the bones of small mammals. Photo: Jake Stangel

California naturalist Joseph Grinnell brought down the second owl with a single shot. The first had not been so easy.

It was the evening of June 18, 1915, and Grinnell had been working with a team of field assistants in Yosemite National Park to trap, shoot, catch, and catalog every creature they could find for the University of California Museum of Vertebrate Zoology. One of the men, Charles Holliger, had spotted the owls that morning near Ostrander Rocks, a knobby ridge of granite protruding out of the thick forest. But the owls—species yet unknown—proved uncooperative.

As Grinnell and Holliger worked their way through a “fine forest of fir,” the anxious call of a Ruby-crowned Kinglet cut the evening air. Following the sound, the men flushed a large owl, which landed atop a Jeffrey pine. Grinnell snuck up on the bird and fired—a hit, but no kill. “A Great Gray Owl,” he wrote in his field journal, underscoring the words in surprise. Its “deep reverberating who’s” drew a second owl. This time, Grinnell’s shot was sure.

What would become Specimen MVZ:Bird:25535 was tied up alive and brought back to camp to be photographed as one of Yosemite’s first two Great Gray Owl records. Grinnell surmised the owls were a mated pair; the owl shot second, Specimen MVZ:Bird:25534, was a male. Grinnell noted that the female had a large bare area on her belly and thighs, an “indubitable indication of breeding.”

Joseph Grinnell, the first director of the University of California Museum of Vertebrate Zoology, prepares a field specimen. Photo: The Bancroft Library/University of California The owls were just two of a total of 4,354 creatures that Grinnell and his team amassed during their ambitious multi-year survey of the park. Yet he recognized the significance of this particular find.

“The discovery of the Great Gray Owl in the Yosemite section was one of the notable events in our field experience,” he wrote in Animal Life in the Yosemite, the 1924 book describing the survey. “And what was most surprising was the fact that the bird was apparently quite at home and nesting. No previous record of the breeding of this northern species of owl south of Canada is known to us.”

Grinnell’s ease in finding the owls would prove to be sheer luck. The California owls were so infrequently spotted in subsequent decades that biologists even reported on stuffed specimens, like one described in 1943 that “was darkened by smoke” from a stint on a family’s fireplace mantle. Grinnell’s The Distribution of the Birds of California, published posthumously in 1944, offered a terse summary of the owl’s situation: “Numbers small, justifying the term ‘rare.’”

Grinnell collected this female owl, MVZ:Bird:25535, during a 1915 survey of Yosemite National Park. Photo: C.D. Holliger Photo, Museum of Vertebrate Zoology Archives, University of California, Berkeley Seven decades later, biologists are still trying to glean information about the elusive bird. As a species, they are breathtakingly large, North America’s biggest owl by length, nearly three feet long with a five-foot wingspan. Their populations span the top of the globe, across Europe, Asia, Canada, and Alaska, into the northwestern United States. But the California population has long held particular fascination, and scientists have turned to high-tech tools to expose its secrets once and for all.

With his tousled dirty blonde hair, and a wardrobe that skews heavily toward Carhartt jeans, Joe Medley, 33, has that mildly rumpled look of someone who has spent thousands of hours sitting in the woods, listening for rare birds.

One early evening this past spring, Medley, then a graduate student at the University of California, Davis, homed in on a charred ponderosa pine spattered with what looked like white paint. It sat at the edge of a mid-elevation wet meadow in the 900,000-acre Stanislaus National Forest on the western side of Yosemite National Park. He knew the whitewash, combined with a few scattered oval pellets the size of cigar stubs, was strong evidence that a Great Gray Owl had perched there, listening for prey out in the meadow. Thus he got to work, hooking up two black teacup-size funnels to one of the pine’s broken branches. Each funnel held a sensitive microphone wired to a recorder in a waterproof case, capable of logging the sounds of the meadow for a week or more.

An owl pellet found on the edge of the meadow contains the bones of small mammals. Photo: Jake Stangel It’s a setup Medley has perfected since beginning his master’s degree in 2009. While working on his thesis, he fine-tuned existing computer software to pluck Great Gray Owl vocalizations out of nearly 64,000 hours of sound he recorded. For his Ph.D., he expanded on that work, examining how the remote devices could help locate Great Gray Owl nests and document nesting behaviors. Typically, Medley would just walk away from the recorders and leave them to their job. But on this night he also demonstrated the standard monitoring technique of broadcasting territorial calls into the forest. This method of eliciting a response from nearby males can be useful, but it also has drawbacks for a bird highly sensitive to disturbances. Achieving a less-invasive yet equally effective alternative technique is what makes Medley’s approach cutting edge.

He reached over to a speaker in a waterproof box on the ground and started broadcasting a taped recording.

“Whoooo ... whoooo ... whooo ... whooo ... whooo ... whooo ... whooo ... whoo!” the speaker rumbled. Listen here

Medley sat in silence, his head swiveling slightly, straining to sieve a response out of the soft background chattering of Hermit Warblers, robins, and crickets.

“Whoooo ... whoooo ... whooo ... whooo ... whooo ... whooo ... whooo ... whoo!” the speaker boomed again. An airplane roared overhead, distant but distracting.

The broadcast tape played out a 10-minute cycle, but nothing answered. Then as Medley was beginning to pack up, he detected a faint, unmistakable hoot of a Great Gray Owl on the opposite edge of the meadow: “Whoooo ... whoooo ... whooo ... whooo ... whooo ... whooo ... whooo ... whoo.”

He froze and a wide smile spread across his face. Bingo.

Great Gray Owls can be difficult to detect, even for experienced field biologists. Joe Medley has gotten around this problem by using a remote recording system. Photo: Jake Stangel

Historically, ornithologists have had far more rudimentary tools at their disposal. In 1979, Jon Winter, a northern California birder, drove more than 12,300 miles in a blue Nissan pickup, spending 70 days in the field traversing the bird’s presumed range. In spite of his efforts, he located just seven birds and five nests. Ultimately, he estimated the state’s population at 53 birds, a find that led California to list the Great Gray as a state endangered species in 1980.

For the next two decades, only a handful of studies added to that body of knowledge. Then West Nile virus landed in North America in 1999, famously causing crows to drop dead in the streets of New York City, Washington, D.C., and beyond. As the virus moved west, its casualties included all 27 captive Great Gray Owls at The Owl Foundation, a bird-rehabilitation facility in Ontario. John Keane, a wildlife ecologist at the Forest Service Pacific Southwest Research Station, saw opportunity in those grim statistics.

In 2004, as West Nile virus spread throughout California, Keane drummed up funding to collect blood samples from Great Gray Owls and Spotted Owls to screen for antibodies to the disease. More followed, giving researchers momentum to address other questions: How could they best track Great Gray Owl populations, given that they were so rare and hard to find? And were the Sierra Nevada owls genetically different from the rest of the North American population?

Keane and Josh Hull, now recovery division chief for the U.S. Fish and Wildlife Service’s Sacramento field office and an adjunct professor at University of California, Davis, realized they could use blood samples from the West Nile survey to determine how long the Sierra birds had been separated from the main population. “We knew that [Great Gray Owls] are isolated now, but we didn’t know whether that meant they were isolated a million years ago, 500 years ago, 50 years ago,” Hull recalls. They also decided to collect molted feathers to see whether Hull could extract DNA to identify individual birds.

From the fieldwork’s start, banding Great Gray Owls proved a challenge. The animals are well camouflaged and easily spooked. “If you see a Spotted Owl, you can walk right up to the tree where it’s sitting,” said Medley, who joined the team in 2007. “With Great Gray Owls, they see you from a long ways away and they will flush, and you wouldn’t hear them.” Even after the team managed to catch 32 birds using a baited trap, the bands proved nearly impossible to see among the thick feathers covering the owls’ legs. To truly make progress, they needed new techniques.

Joe Medley carries recording equipment to set up in a meadow. Photo: Jake Stangel

The world is full of elusive bird species.

To search for some of them, such as the Ivory-billed Woodpecker, Kurt Fristrup, a bioacoustical scientist with the National Park Service’s Natural Sounds Program, had begun using remote recorders. When he encountered Medley and Keane at a Great Gray Owl symposium in 2008, he encouraged the pair to try using them to eavesdrop on the owls. Medley jumped at it.

The next field season, Medley was hanging his recording equipment on the fringes of 50 wet meadows in Yosemite National Park and in the Stanislaus National Forest. Months later he had about 40 terabytes of data, only 5 terabytes shy of the volume of data collected by the Hubble Space Telescope in its first 20 years of observations. His next step was to fine-tune the voice-recognition software to distinguish between other animals and the owls, and then the unique sounds of mom, dad, and their chicks.

This proved tremendously difficult. At first, the software tagged everything that remotely sounded like an owl: Coyotes yipping. The rumble of a high-elevation jet. Bears crunching on the microphones. The constant beeping of a Red-breasted Nuthatch, like a truck stuck in reverse.

The worst were the incessant alarm calls of Douglas’ squirrels. No matter how much Medley tweaked the software, the squirrel calls “skipped right through,” because they were so similar to juvenile owl calls. It was a major problem. If he couldn’t find a way to deal with all the false positives, he wouldn’t be able to use the software to detect young birds, a key indicator of the population’s health.

Meanwhile, results from the blood samples were trickling in—no trace of West Nile virus antibodies. But they did show clear genetic evidence that the Sierra Nevada owls were a separate subspecies. “It was pretty exciting,” Hull says. “We didn’t know it would be as distinct as its own subspecies when we started.” They published the findings in 2010: This tiny population of Sierra Nevada owls, now named Strix nebulosa yosemitensis, had managed to survive despite isolation from populations in Canada for nearly 27,000 years, a relict population left over from when the owls lived in the south during the last Ice Age—a boreal bird that has evolved to cope with a much more temperate climate.

By the following winter, Medley had used a statistical tool called a random forest analysis to finally crack the false-positive problem and make his surveillance technique work at a practical level. As he culled the data, insights began to emerge. For one thing, Great Gray Owls were positively noisy when people weren’t around. In the end, he identified 7,445 male, 13,163 female, and 43,004 juvenile calls, and showed that acoustic monitoring was as effective as traditional survey techniques, with the advantage that it doesn’t bother the birds.

“Say you have a project coming up like a road expansion,” Medley says. “If your goal is just determining whether or not an owl is there, you can use the recorders and it doesn’t disturb the birds whatsoever. You can get comparable results to the more-invasive traditional broadcast methods.”

The recorder logs sounds for a week or more. Photo: Jake Stangel

Park ornithologist Sarah Stock oversees Yosemite’s Great Gray Owl program, which includes funding for Medley’s research. She sees the value of using the remote-recording units in Yosemite, especially when it comes to figuring out where a pair of owls is nesting. “Nest searching for Great Gray Owls is extremely difficult, in contrast to other species of owls,” she says.

But Stock is even more excited about the team’s genetics work. So far, more than a hundred individual owls have been identified from the feathers found in 8 to 10 meadows. “It could be a real game changer,” she says. Currently, if her survey crews see a Great Gray Owl, they have no idea whether it is the male that was there the previous year or a new individual. DNA from dropped feathers can answer that question.

No one knows how much individual birds move around during the summer, or how long the birds live, or whether adult birds return to the same meadows year after year. Those questions can now be answered, too. More important, by tracking the number of individuals, researchers can tell if the population is growing, stable, or in decline—a critical piece of information when the owl numbers are so vanishingly small.

The scientists traverse a wet meadow in the Sierra Nevada where Great Gray Owls prey upon small mammals. Photo: Jake Stangel

Although the core of the California Great Gray Owl population lies within Yosemite National Park, its boundaries can't protect the birds from vehicle collisions, wildfires, disease, and climate change. Just three years ago, the Rim Fire incinerated an area more than six times the size of Washington, D.C., burning 10 of the 18 meadows in Yosemite with suitable nesting habitat for Great Gray Owls. Cattle grazing, the loss of large dead trees for nesting, and accelerating second-home development put additional pressures on birds outside the park. Climate change poses another major threat. Scientists listed the owls in 2014 as one of the bird species in the Sierra Nevada that will be particularly vulnerable to changes from a warming planet.

Given these pressures, a coalition that includes the National Park Service, the Forest Service, the California Department of Fish and Wildlife, and The Institute for Bird Populations is working on projects to increase protection for the owls. A 2015 study cataloged the 56 known nesting records in California since 1973, and found a surprising 21 percent of the nests in hotter, lower habitats—raising a red flag, since this is also prime land for second-home development.

The study also underscores the importance of artificial nest trees, which have been the Forest Service’s answer to the special needs of the Sierra Nevada owls. Unlike their northern cousins, which nest mostly in abandoned stick nests, the Sierra Nevada birds nest only in snags, the broken-off tops of large-diameter dead trees, which can be in short supply given logging practices in the national forests. The lack of suitable nesting trees may explain why there are so few Sierra Nevada owls. Forest managers have tried to remedy this problem by creating artificial snags, lopping off the tops of selected big trees near prime wet meadows.

Medley’s detective work helps address another challenge on Forest Service property. The public lands are “multiple use,” so ranchers can get permits to graze cattle in the lush wet meadows the birds favor. “Grazing—and overgrazing—are a primary threat,” Keane says, because cows can alter meadows by chomping and trampling grasses, which reduces prey numbers. But if biologists know where the birds and their nests are located, they can protect those areas.

The state’s new Great Gray Owl conservation plan, which is still pending final approval, builds on this knowledge. It encourages land managers to safeguard the big-diameter trees the owls depend on, promotes the use of artificial nesting trees where natural ones have been cut or destroyed by fire, and names the feather DNA forensics and Medley’s remote-recording technique as new monitoring options to consider.

A pan trap used to catch owls for banding. Photo: Jake Stangel

Back in the Stanislaus National Forest Medley followed up his evening of broadcasting calls with a visit to one of his favorite meadows, emerald and radiant after a recent rain. Hermit Warblers and juncos trilled atop a soft chorus of katydids and crickets as Medley pointed out “tree islands,” groups of trees that stick out like thumbs into the grassy areas, a key feature that attracts owls.

The tree islands offer good perches from which Great Gray Owls can listen for and catch voles and gophers, he said, which is one reason he often finds owls here. As if to underscore his words, two Steller’s Jays erupted from across the way, screaming excitedly. Medley stopped, raised his binoculars, and pinpointed the source of their distress: a Great Gray Owl perched on a Jeffrey pine about 100 yards from where he stood. Its fine brown-and-gray feathers neatly blended against the pine’s dappled trunk. The giveaway to the bird’s presence: the thin white “mustache” of feathers underneath its huge facial discs, flashing now and then like a faint smile.

A century ago, Joseph Grinnell was alerted to a different owl on another Jeffrey pine by the scolding chatter of a Ruby-crowned Kinglet, and wondered how a bird from the north could be so at home nesting in the wilds of the Sierra Nevada.

Medley and his colleagues now know the answer to Grinnell’s question. The owl that gazed across the meadow was an Ice Age remnant, a northern bird that proved adaptable enough to survive in tiny numbers in California’s more temperate climate. Now the biologists believe they have the tools to secure the birds’ future here.

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